rs37280369 SNP Detail

Summary

• ID
  rs37280369
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149149981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAATTCA AAAGATTTTT
  TTGAATTTGT AATTTCATGA CATTTTGATG TGATTTAAAG TTAAAATGAC TATGGAATGA
  TTAAAATATT ATTACAAGTC ACTTCAAGGA AACACAGTTG AAGTATTACA AGCTAAGGGA
  TTGCTTTCAG AAATAAGACG TATATTGTAC AATCTATTAA CCACTTCCAC ACATTTTTAA
  M
  CCGAATATAA CCATTTGACT ATTGAAATCA TTCTTAAATA ACGATCTCCA CTGTGCTATA
  TACATGGCAG GGTTTAAAGA GCCCCTTTAC AGTAAAGTTT TCTAAAATAC GATTTAAATT
  TAAAAACAAT ACCTACCAGC ACGTCTAACA ACAGTAACGG AATCCAACTA ATTGCAACAC
  TTCTGCATAG CCTAGTAATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51052136	NES13892901	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	C	A	A	A		A	A	C		A
ss136071440	ENSMUSSNP5359801	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A						A
ss321018999	CHEV_3_149107308	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37280369					SNP	C	A	A	A	A	A	C	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052136	NES13892901	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149149981 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	1179 bp upstream
Rr587324	regulatory region 587324	439 bp proximal
Rr587325	regulatory region 587325	838 bp proximal
Tssr36100	transcription start site region 36100	842 bp downstream
Tssr36101	transcription start site region 36101	909 bp downstream
Tssr36102	transcription start site region 36102	923 bp downstream
Tssr36103	transcription start site region 36103	1007 bp downstream
Tssr36104	transcription start site region 36104	1032 bp downstream
Tssr36105	transcription start site region 36105	1109 bp downstream