rs37281716 SNP Detail

Summary

• ID
  rs37281716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18709867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTGCAC AGTTTTGTGG
  CTGGTGTTCG TCCTTCGAAC ATTTTCATGC TTCTAAGTGA CAGTGTACAG GTACAGCAGT
  TAACACAGTG GGCATGATGC ACTTGTACCA AATGAATGAT CAGCGCTCAT CTCCAGTGCA
  GGGCCTCTAT ATTTCTGGTT GGTTCCGTTT GGCTCCAAGG AAAGCAGGAA TAGGTTATAT
  Y
  TGTTTGGGAT CATTTTGGTG ATCAGTGACA GAACTCTGTG ACCTGTGACC AAAATAACCA
  GAATTAAAAG ATATACAATA TAATATAATG CCATATACTA TAATAATATG ATATGAATAT
  GTATAAAAAC AGAAAACAGG AAGGAGATTA TTATTTGGGG AGGAAGGAGC ATAAGGAAGA
  AGGGAGAGAG TATGAGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss50685037	NES13607327	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs37281716					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685037	NES13607327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18709867 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	238 bp upstream
Gm50202	predicted gene, 50202	within coordinates
Gm59201	predicted gene, 59201	1138 bp upstream
Tssr155454	transcription start site region 155454	1886 bp downstream
Tssr155455	transcription start site region 155455	1854 bp downstream
Tssr155456	transcription start site region 155456	1814 bp downstream
Tssr155457	transcription start site region 155457	1063 bp downstream
Tssr155458	transcription start site region 155458	237 bp upstream