rs37285180 SNP Detail

Summary

• ID
  rs37285180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75413586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGCTTG GCAGCAGCCC
  TGGCTCTTAC AAAAACACAG ATACCTGTAG AATGAGCAGG CATCCTCACC GACTGAGCCT
  GGGGGCCTAG CTGTAGCATG CAGCCCCAAG GCTAAATGAC AGCATCTCCG TTATTGTTGG
  GAGCGTGAGG ACTCCAGGAA ATGGGTGGAT GACTGTTGTC TGAAGGGATC CAGCCTGTTG
  K
  AAGGACTGAC CGCTTCCTGA AGGATTCACT ACTCTTCTTT ACAGGAAATG TTTAAATAAT
  TGAACTCTCT AATTGGGTTA AAGAGATCCT GAACACGTGG GTGTTCTATA AGTAAAGGAA
  TGAGTAAATA ATATAGTAAC CTTTCTCTAT GGGCCCTGTG CTTAGAGAGA TCGTTTTGTT
  TCGTTTATAC AGATATGATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533203	NES14628256	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37285180					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533203	NES14628256	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75413586 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	1864 bp upstream
Rr404213	regulatory region 404213	536 bp upstream
Rr495436	regulatory region 495436	741 bp distal
Tssr4478	transcription start site region 4478	1194 bp downstream
Tssr126621	transcription start site region 126621	1168 bp downstream
Tssr126622	transcription start site region 126622	1138 bp downstream
Tssr126623	transcription start site region 126623	443 bp upstream
Tssr126624	transcription start site region 126624	487 bp upstream
Tssr126625	transcription start site region 126625	646 bp upstream
Tssr126626	transcription start site region 126626	661 bp upstream
Tssr126627	transcription start site region 126627	677 bp upstream
Tssr126628	transcription start site region 126628	988 bp upstream
Tssr126629	transcription start site region 126629	1663 bp upstream
Tssr126630	transcription start site region 126630	1702 bp upstream
Tssr129768	transcription start site region 129768	1339 bp upstream
Tssr129769	transcription start site region 129769	434 bp downstream
Tssr129770	transcription start site region 129770	503 bp downstream