rs37287139 SNP Detail

Summary

• ID
  rs37287139
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143352553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAGCCA TGTAGGACAC
  GCACACACAC ACACCGTCAG AAGCATCACA TAGACACTGT GCCCCACTGT GGTGTTTTGT
  GATTTTTATT TTGCCCTCAC ATTTTCTTTG TCACCAACAT GTTTTTTTTC TCCCTCTCTC
  TTCTTCTGTT CCCATGGGGA AATTTTAAAA TTGCTTGTTT TAATCAAAAG CACCCAGGAT
  M
  TTTGCATATT AAGTCATATC CTATGCAGCT TGGAGAAGTT AGAAAAGGTT TGGGGTACTT
  GCTTGTTGAA TAATTGACAC CACATAGTCC AGGTAGCAAG GAAACACAGA AAACACAAGC
  AGCCCATGGA GTGAGTACCA GGCTGGACCT GTTTGGGGCG CTTACACTGT GTAAAGAATG
  AAAAGAAAAC ACAAAGAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51663317	NES14647425	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37287139					SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51663317	NES14647425	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143352553 () rs orientation: forward

Symbol	Name	Function Class
D3Mit17	DNA segment, Chr 3, Massachusetts Institute of Technology 17	433 bp proximal
Gm33809	predicted gene, 33809	within coordinates
Gm38006	predicted gene, 38006	within coordinates
Rr398093	regulatory region 398093	149 bp upstream