rs37288745 SNP Detail

Summary

• ID
  rs37288745
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99506775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCAAGT CACTTTATAT
  AGTCTCTTTA CATTCCACTC CTAAGTAACT TTCTCCAGTC TAACCCTACC TTTCACTAAG
  TTTACTTAAA CCCTTCTAGT AAGCCTACTA AGAAATCTTA AGCACTATCA TATTCTTTCC
  TCAAGAAAGA CTTGAGGACC AGACAGATGG CTCAAGGCTT ACAAGCCGAG TTTGGTCCCT
  S
  GATCCTGCAC AAAGCCAGTT CCAGTCCAGG CCAGCTTAGC TACACAGCAA GACCCTGTCT
  CAAACTTGAC TCTAAGGACC CTCCAAAAGA CAAGGGGAAC TGGGGACGTG GGTCAGTGGT
  GGAGTGCTGC CTACCATGTA GGAAGCTACA CAAATGCGGG ATGATCAGGC ATCCATCTCT
  TAAGCCCTAG CCATCTGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51920260	NES14942907	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37288745					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920260	NES14942907	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99506775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	940 bp proximal
Rr400465	regulatory region 400465	1260 bp upstream
Rr652012	regulatory region 652012	1321 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	1491 bp upstream
Tssr68078	transcription start site region 68078	1555 bp upstream
Tssr73711	transcription start site region 73711	732 bp downstream
Tssr73712	transcription start site region 73712	1304 bp downstream
Tssr73713	transcription start site region 73713	1342 bp downstream
Tssr73714	transcription start site region 73714	1424 bp downstream
Xrra1	X-ray radiation resistance associated 1	1650 bp upstream