rs37290380 SNP Detail

Summary

• ID
  rs37290380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81933768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGAAGG GGGCATCAGA
  TGCTTTGGAA CTGTAGATAG AGATGGCTAT GAGCTGTCAT GCGGGTTATA GGAATTGAAC
  CTGGGTCCTC TGGGAGAGCA GCCATTGCTG GTAACCACTG AGCCACCTCT CCAGCCGGGA
  AGAGTGACCT TTTTAATGCC ATGTTACTTT TGATGCAGGG AAGAAAAATC TCAAGCTTTC
  Y
  TTGCCTCTTG TATTTTAAAC CTGCCATGTG TCTTGACTGA CAGATAGCAG CATGTCTACC
  AGAAAGATGG TTTGAGAACT CTGCTATGAG GACATCAATT CCCCAGCTAG AAAACTTCAT
  TAAGTTTTTG TTGCAGTCTG CACAGAAATT ATCCTCAAGT GAATTCAGGT AATGCTCACT
  TAATTTTTCA CCTCCAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51348129	NES13741150	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs37290380					SNP	T	T	T	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51348129	NES13741150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81933768 () rs orientation: forward

Symbol	Name	Function Class
Gcfc2	GC-rich sequence DNA binding factor 2	within coordinates
Mrpl19	mitochondrial ribosomal protein L19	1064 bp downstream
Rr632566	regulatory region 632566	181 bp distal