rs37292431 SNP Detail

Summary

• ID
  rs37292431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:45502384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTTATA GAAAACCAAT
  CTGAACCTTA GTCAGGCTGA GCATCCCATG GTCCTGAGTG CTTTCTATCC ATTTCCTTGG
  ACTTGGGGCC AGAGGTCTGT GTGTAATGTG GTCACTGGGA GAGAGAGTAC AGTTGCAGAG
  TTGATGGGAA GAGGCCATGC CATGAAGTAG TTAATTCGGG AGCTCACTAG AGAAAGGGTT
  R
  ACAGTATAAA TAGAAAAATC ATAGTGAACG TGAGTAAGGT GTTGGGATAT GGTCAACTTT
  TGGTTGTCTG TGAGCGTGTG ACACCAGTTT CTCCGAACTT ATACTTTTGA AGGTTCTTCT
  GTGCGCTACT GTGTGTGTAA ATCGTGTAGC TCGTGTTTTT AGATCGTCCC TTAAGTAACC
  AATTAATTTA TTAATTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51951768	NES14977142	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37292431					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51951768	NES14977142	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:45502384 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20295	CpG island 20295			1716 bp proximal
Fat1	FAT atypical cadherin 1			Intron
				Noncoding-Transcript-Variant
Tssr77124	transcription start site region 77124			1573 bp upstream