rs37293944 SNP Detail

Summary

• ID
  rs37293944
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127585389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTTGGT ATCCAGCACG
  CAAAGGGTTA AGCCTGGAGA GTTGGGGGGG GGGGGGTTGG AGGAATTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TAGGGGGGGG TGAAGAGCCA TGCCTTTGGC
  TCCTGTCTGT AGCTTTTCAT TTCCTCTCTT TCCTTGTTCT ATAATAGTTT CTTTGTTAAC
  M
  GATTATTACT GTTCCCCAGA TGTTCATGTT TGACAACTTT GTGATGTCAG ATAACAGAGT
  AATATACTGT GTAACACACG CATTGCCAAA TGATACTTTA CTATCGCTAA TTCTATTTTA
  TTCCACAAAA ATATGATGGC TTATGGGTTT TGTAAAGAAA AAAAAATTGT TAGATATTTG
  AACAGATCTT CCTGTACCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51618287	NES14659886	PERLEGEN	MM_PANEL2	f	SNP			C	A	C	A	C	C	C		C	C	C		C
ss135871398	ENSMUSSNP2692435	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320956935	CHEV_3_127494658	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37293944					SNP	A	A	C	A	C	A	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618287	NES14659886	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127585389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	1612 bp distal
Cpgi13801	CpG island 13801	791 bp distal
Gm56817	predicted gene, 56817	1483 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr398007	regulatory region 398007	1797 bp upstream
Rr584860	regulatory region 584860	1818 bp distal
Rr584861	regulatory region 584861	1921 bp distal
Rr584862	regulatory region 584862	1494 bp distal
Rr584863	regulatory region 584863	926 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31599	transcription start site region 31599	1931 bp downstream
Tssr31600	transcription start site region 31600	1863 bp downstream
Tssr31601	transcription start site region 31601	1811 bp downstream
Tssr31602	transcription start site region 31602	1757 bp downstream
Tssr31603	transcription start site region 31603	1739 bp downstream
Tssr31604	transcription start site region 31604	1615 bp downstream
Tssr31605	transcription start site region 31605	1101 bp downstream
Tssr31606	transcription start site region 31606	915 bp downstream
Tssr31607	transcription start site region 31607	691 bp downstream
Tssr31608	transcription start site region 31608	595 bp downstream
Tssr31609	transcription start site region 31609	556 bp downstream
Tssr31610	transcription start site region 31610	463 bp downstream
Tssr31611	transcription start site region 31611	350 bp downstream
Tssr35598	transcription start site region 35598	1982 bp upstream
Tssr35599	transcription start site region 35599	1900 bp upstream
Tssr35600	transcription start site region 35600	1872 bp upstream
Tssr35601	transcription start site region 35601	1839 bp upstream
Tssr35602	transcription start site region 35602	1522 bp upstream