rs37294656 SNP Detail

Summary

• ID
  rs37294656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68600385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTATCCC CCAACAGAGC
  GTGCGTTCAT AAGCACCTGG GAACAGAGGA GGGAAGGAGG GAAACTCTGT CTTCCTGTTT
  TGTTTTTAAA TCTTTCTTGA GGATCTTCTA GCTTGTTGTC TTATGGCTAT CCCAACATAA
  GCTCCGCTCC ACAAGCCCTT CTTGGTGAAT TTTCTTTCTT TCCTTCCCGT CTTGCATAAC
  R
  TGCTGCTGGC TGTTCCTCCA AGCTCAGTCT TAATTGAGTG GGGTTCCCAG GAGGGAGAGA
  TGGCTCTGTG GTTAAGAGAG CTGGCTGCTC TTCCAGAGGT CCAGAGTTTC CACACCCTCA
  TGGTGGCTCA CAATCATGGT AACTCTGATC ATAGGGAACC TGTCGTTTTC TCTGTGCCTC
  TGTGGGCACT GAGCACATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51541946	NES14683688	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37294656					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541946	NES14683688	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68600385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	1602 bp distal
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	1690 bp distal
Rr578060	regulatory region 578060	within coordinates
Tssr29479	transcription start site region 29479	1689 bp downstream
Tssr29480	transcription start site region 29480	1682 bp downstream
Tssr29481	transcription start site region 29481	1641 bp downstream
Tssr29482	transcription start site region 29482	1614 bp downstream
Tssr29483	transcription start site region 29483	1541 bp downstream
Tssr29484	transcription start site region 29484	1402 bp downstream
Tssr29485	transcription start site region 29485	1117 bp downstream
Tssr29486	transcription start site region 29486	1095 bp downstream
Tssr29487	transcription start site region 29487	983 bp downstream
Tssr29488	transcription start site region 29488	965 bp downstream
Tssr29489	transcription start site region 29489	641 bp upstream
Tssr29490	transcription start site region 29490	687 bp upstream
Tssr29491	transcription start site region 29491	978 bp upstream
Tssr29492	transcription start site region 29492	1026 bp upstream
Tssr29493	transcription start site region 29493	1043 bp upstream
Tssr33509	transcription start site region 33509	839 bp upstream