rs37297436 SNP Detail

Summary

• ID
  rs37297436
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127585014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGCAAA TTCTAAAAAC
  GTGAGAAACC TTGATGGCAT GCGTGACCCC TACCCAGGGG AGCCGTGCAA ACTTCCCTTT
  AAACCGTTTG GACACCTGGC TCATTTTAGT AAAAACATCT CTGCGTAGCT TCTCATCTGT
  GGTATTTGCA ACCAATCAGC CTTGTGCAAA AACAAAGCCC GGTAGTCCTT CACTGGTTTC
  R
  CAGGACACAG GGGTCAGTTA GGAGCAGCTT GTCCCGCGTG CGCAGCTGGG TTGTCAGTGC
  TGCGGTGTAC CTAACACACC GACACAGACC CCTCTTTTTT CTCCCAGGAG AGGAGACAAG
  GCTCAGGAGT CCTGATCTAG CTGTGGCCAC TGGAAGACTC TCAGGTGAGT GTGTGCATCT
  TGGTATCCAG CACGCAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51618296	NES14659883	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G	A	A	A	A		G	A	G	G		G
ss135871392	ENSMUSSNP990678	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320956934	CHEV_3_127494283	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37297436					SNP	G	G	G	A	G	A	G	A	A	A	A	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618296	NES14659883	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127585014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	1237 bp distal
Cpgi13801	CpG island 13801	416 bp distal
Gm56817	predicted gene, 56817	1108 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	1443 bp distal
Rr584861	regulatory region 584861	1546 bp distal
Rr584862	regulatory region 584862	1119 bp distal
Rr584863	regulatory region 584863	551 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31599	transcription start site region 31599	1556 bp downstream
Tssr31600	transcription start site region 31600	1488 bp downstream
Tssr31601	transcription start site region 31601	1436 bp downstream
Tssr31602	transcription start site region 31602	1382 bp downstream
Tssr31603	transcription start site region 31603	1364 bp downstream
Tssr31604	transcription start site region 31604	1240 bp downstream
Tssr31605	transcription start site region 31605	726 bp downstream
Tssr31606	transcription start site region 31606	540 bp downstream
Tssr31607	transcription start site region 31607	316 bp downstream
Tssr31608	transcription start site region 31608	220 bp downstream
Tssr31609	transcription start site region 31609	181 bp downstream
Tssr31610	transcription start site region 31610	88 bp downstream
Tssr31611	transcription start site region 31611	9 bp upstream
Tssr35598	transcription start site region 35598	1607 bp upstream
Tssr35599	transcription start site region 35599	1525 bp upstream
Tssr35600	transcription start site region 35600	1497 bp upstream
Tssr35601	transcription start site region 35601	1464 bp upstream
Tssr35602	transcription start site region 35602	1147 bp upstream