rs37299712 SNP Detail

Summary

• ID
  rs37299712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24684201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGTGAAAT GTATTAGAGT TGGGAAGGGA TAGCGAAAAA
  GAAAAAAGTG ATGACTTTTT TCAACTGTCT TAACTTAGCT ACTTGATTTC TGATAGTCGG
  Y
  GATTAGGGTG TGCGATAATT ATTACCAAGG CCCTTAGAAT AGCAACTCAT TTTCCCTGGG
  TTGTAAGGGT TTTCAGAACC CCTATCCTGA GCAGTTGCTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50654685	NES14025670	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37299712					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50654685	NES14025670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24684201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21500	CpG island 21500	1976 bp distal
Cpgi21501	CpG island 21501	794 bp proximal
Rr675417	regulatory region 675417	1369 bp proximal
Tbx20	T-box 20	within coordinates
Tssr88515	transcription start site region 88515	273 bp downstream
Tssr88516	transcription start site region 88516	1371 bp downstream