rs37301800 SNP Detail

Summary

• ID
  rs37301800
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151994877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGACAT ATTTACCTTC
  CGTGCTTTCA CAATTAAAGC TGACAAAATT TTCCTTCCAC TTTCAGCAAG GAATGACCTG
  TTGTCTGCTT CTGCAAGGAT TAGCTGAAAA ACACCAGTCC ACAGTGTGAA AATGAGTGAT
  GTCCCGTGAC ACATGGGTGA CTGGGCAGTC AGGGCAGTGG ATGTGATGCT AAGTCACTAC
  K
  GAAGGCAGAG GAAGTCCAGA TTCACAGAAA TGGAGACTTA TGCTCAGTGA TCAAAAAAGA
  TTCAGGGCGG GTAAATTTGA TCTTAAATTC TGTTTCAGAC AATTAAATAT CTGCAGTGAG
  GAGATGCAAG AATGGCTTAG TGATTAAGAG CATGCTCTGG GGCTAGTGAG ATGGTTCAGC
  AGGTAAGAGC ACTGACTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060132	NES13425268	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37301800					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060132	NES13425268	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151994877 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587515	regulatory region 587515	1186 bp distal
Rr587516	regulatory region 587516	198 bp distal
Tssr32405	transcription start site region 32405	1086 bp upstream