rs37302709 SNP Detail

Summary

• ID
  rs37302709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55239722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCAAACA CAGAGCTGGA
  CATCTGTGAC CCTGCCTCAG GCCTAGGTTG TCTGCTACCT GATTATAAGG TTTTAGTGTC
  CTCTTGAATA GGGCTCATTG TCCTCTCCTG AGAAGTAAAA TCTTGCCTGG CCTACAGAGC
  CTCTTATCTC TATGATGATA CCTTTGTGGT CTTAATGATT TAGTAACAGT GTAGTGATGC
  R
  CACCTTCCAC ATGGATAGAA GGAAGAAGAT AGGCTGAGTC ATGAGGCAAC AGCCTCTGGT
  GTCTCACTAG GGGCCAGTAG GGCTGCCTGG TCCCATCACC CCACACTCTC TGGCACTTTG
  ACTTGTCTTT TGACTCACGC TCGGGGGACT TCAGGATATC TCTGTTTCTT TGCTTTGGAA
  TCCTGGAAAT ATCCTGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51221531	NES14297441	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37302709					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221531	NES14297441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55239722 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	576 bp upstream
Tssr5558	transcription start site region 5558	544 bp upstream
Tssr157068	transcription start site region 157068	608 bp upstream
Tssr157069	transcription start site region 157069	635 bp upstream
Tssr157070	transcription start site region 157070	662 bp upstream