rs37303961 SNP Detail

Summary

• ID
  rs37303961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72323382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGAACCC AGTTTACCCG
  AGCTGGACCT CTGCGGACAC TAGCCCAGCC CCAGAGGCCT GCTCACGTAC CCAGGTGCAG
  GAGCTCCCGG GAGACGGCTT TTCCAATGCC TGTGCCCCCG CCGGTGACCA CGGCCACTTG
  GTTCTTCAGC AACCCGGCCG CTAGGTAGCT CTGACCAGTC TTCCAAGAGC CCATGGCCAC
  R
  AAGTGTCTGT CTCTGAGTTC TTGCTAAAGC TAGACCACGT GTTCCTCAGA AGTAGCTCTA
  TTAGTAGCAG TCCTTGGCCA CGTAACCAAA CAGACCCCGC CCCTAAGTCC GCGTGGTCCC
  GCCTCAGGCC CCGCCCAGGC CCCGCCTTCG CGGCGCGCTA GGCCTCCTCC CAGAGCTGGA
  CCGCTCCTGG CGGCCGCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51274568	NES14276904	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37303961					SNP	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274568	NES14276904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72323382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	within coordinates
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Rr412794	regulatory region 412794	1237 bp distal
Rr412795	regulatory region 412795	26 bp proximal
Rr412796	regulatory region 412796	157 bp proximal
Tmem169	transmembrane protein 169	172 bp upstream
Tssr114	transcription start site region 114	49 bp downstream
Tssr115	transcription start site region 115	65 bp downstream
Tssr116	transcription start site region 116	82 bp downstream
Tssr7298	transcription start site region 7298	144 bp upstream
Tssr12164	transcription start site region 12164	1 bp downstream
Tssr12165	transcription start site region 12165	25 bp downstream