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rs37305253 SNP Detail
Summary
  • ID
    rs37305253
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:145296390 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAAAGGATT ATCCCTCAGA
    GTTCCAAGTA AGTGAGGGTT GATAAATATG TATAGCTCCT GGGTATAAAT ATTGCATAAT
    ATTTATATTC CCTATTTCAT ACATGTTTTT CCATCAATTT TTATATTTTT TCTATCCTCC
    CCCTTCTCCC CGGGGAGCCT TTCAGACACT CATTGCCCCT GTGGAGGCTC TTGCAGTAAG
    R
    TTTTGTTGAC TATCCAAAAA ACATTGGGAC AGTACTGGCT CTATTGCATG CATGGTGTGT
    GTGTCTGTGT GTGAGTGTGT GTGTGTATGA GAGAGTGTGG GTGTGGGTGG GTGTGGGTGT
    TTACTTGTCA GTATTTGGGG AAAGATAAAC TGCCACCACA CCCTTGCTGA CTGTTCCTCT
    GACACCTTTG GCTTCATGGA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss51671681 NES14640273 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G G G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs37305253 SNP G G G G G G G G G G G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51671681 NES14640273 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:145296390 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr586792 regulatory region 586792 within coordinates
Rr586793 regulatory region 586793 1327 bp proximal
Rr586794 regulatory region 586794 1608 bp proximal
Znhit6 zinc finger, HIT type 6 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory