rs37307395 SNP Detail

Summary

• ID
  rs37307395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132283742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAAGCTGG TACTCCCTGC CTCAGCTGAA CAAGTGTAAC
  AAAGCCAAGC TAAAGCCAGT AGCCTTGTGA GGACTTCGTC TTGAGAGAGG TTTTGGAGCA
  Y
  GGACTCTGCT GACCCCTTGT GGCTACAACT GGTCACAGCA TCTATGGGCG CTTCTCCATT
  TCCCTTCTGG GAAGTGCTCC AACAAAGCTG GGGCTGGATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373322	NES14476208	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37307395					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373322	NES14476208	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132283742 () rs orientation: forward

Symbol	Name	Function Class
Rr12284	regulatory region 12284	within coordinates
Tmcc2	transmembrane and coiled-coil domains 2	311 bp downstream
Tssr13633	transcription start site region 13633	1471 bp downstream
Tssr13634	transcription start site region 13634	1537 bp downstream
Tssr13635	transcription start site region 13635	1620 bp downstream