rs37309046 SNP Detail

Summary

• ID
  rs37309046
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92132422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTTGC CTTGCTGGTG
  GGCGGGGCGG GCAAGGTCCT GCCAGGCCTC TGGGCGCAGC TAGAGGATTC AGGAGTGCAG
  GCAGAGCTCG CGTCATTCAG AGTGAGTCCC CTCTGCGAGG GAAAGCCGGG CTACTGCAGC
  GCCACCAGCA AGGGATTGGG ACTCACGGAC TTCAGAACAG AAGGAGCCTC AGGTGAGTCC
  S
  GCTTTCTGCG CGTTCCGGGA CAGAGCTCGC GGATCTGTGC GCACAAAGGA GCCGGGTACG
  GTGATGGGCG CGGGAGATGC GGATGGGTGG AGAGGGAGCA AGAGCAAGGG CTGGAGGCGG
  TTTGCTCAGG CGGCAGAGGT TATGGTCTGA AGACTGGGAG CAATGGCCGA AAGACTTGGG
  CTCGTGACCC CGGAAGTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52034768	NES15054980	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37309046					SNP	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52034768	NES15054980	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92132422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22145	CpG island 22145	within coordinates
Gm67683	predicted gene, 67683	within coordinates
Plscr1	phospholipid scramblase 1	within coordinates
Rr206878	regulatory region 206878	within coordinates
Rr383753	regulatory region 383753	within coordinates
Tssr86494	transcription start site region 86494	702 bp downstream
Tssr86495	transcription start site region 86495	680 bp downstream
Tssr86496	transcription start site region 86496	640 bp downstream
Tssr86497	transcription start site region 86497	616 bp downstream
Tssr86498	transcription start site region 86498	335 bp downstream
Tssr86499	transcription start site region 86499	309 bp downstream
Tssr86500	transcription start site region 86500	301 bp downstream
Tssr86501	transcription start site region 86501	271 bp downstream
Tssr86502	transcription start site region 86502	242 bp downstream
Tssr86503	transcription start site region 86503	182 bp downstream
Tssr86504	transcription start site region 86504	95 bp downstream
Tssr86505	transcription start site region 86505	58 bp downstream
Tssr90887	transcription start site region 90887	103 bp downstream
Tssr90888	transcription start site region 90888	141 bp downstream