rs37309890 SNP Detail

Summary

• ID
  rs37309890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGAAAA CAAAAGGTTG
  TTTTCTCAGG AAAAGAAAAA CCTTTACAAC CCTACTGACG AATCTGCTTC CACTAAGATG
  CTAGCTTGGC CAAGTCTGTT ATGTCCACCT GAAAAAGTCT TAGCAGAGAA TTTTTGCAAT
  CCCACCCCAA CAACTTCCTA CAAAGGCTTG CTTTTCATCC GACTTCCTAC ATTCCCACCC
  R
  GCACTGGTAT CAAACATACT ATACCCATAC TGGTTTGTTT ACTCTGCATA GGTGCTATGT
  ATAAAACATC TTAGCTATGG TTTTAATGTT AAATTACAGG CAAGGGGAAA ATTGATGGCC
  TTTTCTGGTG CAACCCACAG GACCTTGGCA CCATGGTTAC CTTGAAACCG ATATGCAACG
  TGACCTCAAG GATCCAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50577504	NES13649157	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37309890					SNP	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577504	NES13649157	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846256 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	247 bp upstream
Rr543160	regulatory region 543160	1810 bp distal
Rr543161	regulatory region 543161	1226 bp proximal
Tssr5415	transcription start site region 5415	606 bp downstream
Tssr5416	transcription start site region 5416	1082 bp downstream
Tssr157645	transcription start site region 157645	125 bp downstream
Tssr157646	transcription start site region 157646	155 bp downstream
Tssr157647	transcription start site region 157647	317 bp downstream
Tssr157648	transcription start site region 157648	483 bp downstream
Tssr157649	transcription start site region 157649	583 bp downstream
Tssr157650	transcription start site region 157650	642 bp downstream
Tssr157651	transcription start site region 157651	696 bp downstream
Tssr157652	transcription start site region 157652	833 bp downstream
Tssr157653	transcription start site region 157653	950 bp downstream
Tssr157654	transcription start site region 157654	993 bp downstream
Tssr157655	transcription start site region 157655	1030 bp downstream
Tssr157656	transcription start site region 157656	1060 bp downstream
Tssr157657	transcription start site region 157657	1182 bp downstream
Tssr157658	transcription start site region 157658	1234 bp downstream
Tssr157659	transcription start site region 157659	1337 bp downstream
Tssr157660	transcription start site region 157660	1490 bp downstream
Tssr157661	transcription start site region 157661	1511 bp downstream
Tssr157662	transcription start site region 157662	1616 bp downstream
Tssr157663	transcription start site region 157663	1675 bp downstream
Tssr157664	transcription start site region 157664	1797 bp downstream
Tssr157665	transcription start site region 157665	1804 bp downstream
Tssr157666	transcription start site region 157666	1829 bp downstream