rs37310493 SNP Detail

Summary

• ID
  rs37310493
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151996560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAACAGT ACCTTACTAA
  AGAAATAAAA TAATAAAATA ATAGCTGTGA ACTAAGCTGG AATGATACCT CAGCACTCTG
  GAGTAAATTT TTCCTTCTTC AACTAAATGC ATAGCTTCTT CGTAGAAAGG GCAGGGACAA
  AAAGACTCCA GGCTGAAGGT CTGCTGCGCT TCTCTCTGCT CTGCGAGCTA AGGACACACA
  K
  GACGGATTAC ACTGGAGTAA GAGGAACTGT AAAAAACCCA GGATTTCAAT ACTACCAAAA
  TATGCTACAT GTGACTACCC CACAGAAATC ACTAACATTT TATGTAACAA AAACCTAAAT
  TCACTTTCCT TCAACATTCA ATAGTTAAAG TTCAAGAGCA GCTTGAATGA ACATGGGCGT
  GATCCTGTCT CAGCAAACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51060112	NES13425190	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	G	G	G	G	G		G	G	G	G		G
ss136101792	ENSMUSSNP3748392	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss321028599	CHEV_3_151953887	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37310493					SNP	T	G	G	G	T	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060112	NES13425190	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151996560 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587516	regulatory region 587516	1881 bp distal
Tssr32405	transcription start site region 32405	592 bp downstream