rs37310564 SNP Detail

Summary

• ID
  rs37310564
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:94561849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCCTAC AAAAGAGAGT
  CACAAGGGAG CTGGAGTTGT GCTTTGTCCT ATTGTGGGGC ACTATGGGTG ACTACAAAAG
  CTCAGAAGAG ACTGGGATAG CTCTGTATTT TAAAAAACCA CTTGCTGTCT GCTGCCATTT
  ATGATTTTGT CTAAATATTA AAGCCTTGTC CATATTTCTC TAACCAAAGC CCTGATAGAG
  W
  AACATTTCTG TACCATATTG AATATCAGTA AGACTCAAGA CACTTGGCTG TGAAATGAGG
  TTTATAGTGA GACAGCTATA GTACCTGATT CTGAGAGGAT GTTAGCATGC TAGCATTCCA
  AGGGAGGAAA AGGCCAGTCG GCTGCTGGCA CAGTCTAACG TTTCTCGGGA TAAGAACGTT
  TTATACTCAT TTCTTTCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50776866	NES14220159	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T		T	T	A	A		T
ss323093462	CHEV_9_94580215	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37310564					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50776866	NES14220159	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:94561849 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr383780	regulatory region 383780			within coordinates
Rr684730	regulatory region 684730			557 bp proximal
Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), member 9			Intron
				Noncoding-Transcript-Variant