rs37312177 SNP Detail

Summary

• ID
  rs37312177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131564721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT GGTAAGAAAT GGGCCTCATC
  R
  TGTCACCCAG GATAAAAAAT TAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss51366996	NES14473906	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	G	G	A		A		G
ss145480045	ENSMUSSNP6916796	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss319974761	CHEV_1_133533560	CHEVERUD	SCREENING_POP	f	SNP										G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs37312177					SNP	G	A	G	A	G	A	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366996	NES14473906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131564721 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	1331 bp upstream
Rr12195	regulatory region 12195	480 bp proximal
Rr28482	regulatory region 28482	879 bp proximal
Rr366988	regulatory region 366988	1231 bp upstream
Tssr8635	transcription start site region 8635	1287 bp upstream
Tssr8636	transcription start site region 8636	1323 bp upstream
Tssr8637	transcription start site region 8637	1371 bp upstream
Tssr8638	transcription start site region 8638	1405 bp upstream
Tssr8639	transcription start site region 8639	1457 bp upstream
Tssr8640	transcription start site region 8640	1502 bp upstream