rs37315489 SNP Detail

Summary

• ID
  rs37315489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5651383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAAAC AACAAAACCC
  ACCCAAGATG AAGCCACAGA TTGCATCAGT CCCTGAGCTG CCCCAACATC AGGTTGCAAA
  ATCCTTCCAT TCTCAGAGCA CTCTGGATAG TTCTGCCCCA TCTCCAAAAC CCTCCTGCTC
  CGTTCTTTGC TGCTTCTGAG CAGAGACAGC CGCCTTCCCT CCTGTCTCTT TTCCAATAAC
  Y
  CTCTTATGTG AGGTTTGTTG TAGGATGTGA TTTCGTAGTA TTTTTGGCTC CCAACTGCCA
  GGATACCTTT CTCCTCAGAG CTGTAACATT TACACTGGTT TTAGAGTCAA GTCAGGGGTC
  GGGTGTTCTT TCTTTGGCCT TTTTTCCCTA CAGGATGGTA GTCCTAGAGC ACGTGCTTAA
  TATGTCCAAG GCCCTGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss50578388	NES13651099	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs37315489					SNP	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578388	NES13651099	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5651383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	338 bp proximal
Kat5	K(lysine) acetyltransferase 5	1659 bp downstream
Rnaseh2c	ribonuclease H2, subunit C	518 bp upstream
Rr370434	regulatory region 370434	421 bp upstream
Tssr154457	transcription start site region 154457	486 bp upstream
Tssr154458	transcription start site region 154458	499 bp upstream