rs37318038 SNP Detail

Summary

• ID
  rs37318038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5898590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCCTGT CTCCCTACAA
  TCATAAGCTC TTGTAGGCCA GGGCTGCAAA GTCACCTCTC AAGGGAGCTC TAGCAATAAG
  TCAGTCTGTC CCATCCCTCC CCCAACTTGA TTTGTGGGGG CAGGGTTTCT GTCTAGTGTG
  TCCTAGATCT CTGAGCCCAC AGCTCTGGCA AGACGTGGGC ACCAGCGTGG ATGACTTCAG
  Y
  TTATATTTTC TAAAGGTCAC TCTGAATCCT GCGGGCTCTT GGTAAATATT TGTGGACTGA
  CTCAAACAAG GAGCTCAGCT CTGCTGCAGT GCATGTGAGC CCGAGGACTG GGGTGGTGGC
  GGCGGCGGCG GGTCGGAGGG TGCTCTGAGG ACCAGATGTA AGCAGAAGGG ATTTGAGGGG
  GTGTCCTCAG ACAGCAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss50577072	NES13648178	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs37318038					SNP	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577072	NES13648178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5898590 () rs orientation: forward

Symbol	Name	Function Class
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	148 bp upstream
Gm59610	predicted gene, 59610	within coordinates
Rr370436	regulatory region 370436	within coordinates
Tssr154515	transcription start site region 154515	1778 bp downstream
Tssr154516	transcription start site region 154516	1702 bp downstream
Tssr154517	transcription start site region 154517	1676 bp downstream
Tssr154518	transcription start site region 154518	1652 bp downstream
Tssr154519	transcription start site region 154519	1573 bp downstream
Tssr154520	transcription start site region 154520	40 bp downstream
Tssr154521	transcription start site region 154521	27 bp upstream
Tssr157781	transcription start site region 157781	1931 bp upstream
Tssr157782	transcription start site region 157782	1779 bp upstream
Tssr157783	transcription start site region 157783	438 bp upstream
Tssr157784	transcription start site region 157784	1381 bp downstream
Tssr157785	transcription start site region 157785	1442 bp downstream