rs37322592 SNP Detail

Summary

• ID
  rs37322592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12656726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAACGGAA ATCTGATGGG AGCTGATGAG TATACGGCTT
  CATGAACCAT CATACTGTGG TCCATGTACC AGCTGATTAG CGGGGTGACT GCCGAGTTAC
  Y
  TTAGAATCCT GAGTGGTTTT CCTGGGTTTG GAGAGCTGTT CAAAGCTTTC TGGGTCTCCC
  CTTCATGTCC CAGTTTGCCA CAAAGTGAGA GTTCGTCTGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51469120	NES13985238	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37322592					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469120	NES13985238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12656726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	14 bp distal
Gm57203	predicted gene, 57203	672 bp upstream
Rps5	ribosomal protein S5	within coordinates
Rr368230	regulatory region 368230	551 bp downstream
Rr642402	regulatory region 642402	709 bp distal
Rr642403	regulatory region 642403	499 bp distal
Rr642404	regulatory region 642404	402 bp distal
Tssr64485	transcription start site region 64485	479 bp downstream
Tssr64486	transcription start site region 64486	155 bp upstream
Tssr70626	transcription start site region 70626	703 bp upstream