rs37330863 SNP Detail

Summary

• ID
  rs37330863
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGCCTCA TGATATAAGA
  GTCAAGCAAA GACACCGCAG GGACTTGAAC CCCGTCCTGG AAACCAGGAG TGCCAGCCAC
  CAGCGTCTTT TGCTTTTTTT TTTTTAAAGC TAGGGAAAGG CCAAAAAGCA AAACCTGAGA
  AAACAAAAGG TTGTTTTCTC AGGAAAAGAA AAACCTTTAC AACCCTACTG ACGAATCTGC
  K
  TCCACTAAGA TGCTAGCTTG GCCAAGTCTG TTATGTCCAC CTGAAAAAGT CTTAGCAGAG
  AATTTTTGCA ATCCCACCCC AACAACTTCC TACAAAGGCT TGCTTTTCAT CCGACTTCCT
  ACATTCCCAC CCAGCACTGG TATCAAACAT ACTATACCCA TACTGGTTTG TTTACTCTGC
  ATAGGTGCTA TGTATAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577510	NES13649154	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37330863					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577510	NES13649154	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846123 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	114 bp upstream
Rr543160	regulatory region 543160	1677 bp distal
Rr543161	regulatory region 543161	1359 bp proximal
Tssr5415	transcription start site region 5415	739 bp downstream
Tssr5416	transcription start site region 5416	1215 bp downstream
Tssr157645	transcription start site region 157645	258 bp downstream
Tssr157646	transcription start site region 157646	288 bp downstream
Tssr157647	transcription start site region 157647	450 bp downstream
Tssr157648	transcription start site region 157648	616 bp downstream
Tssr157649	transcription start site region 157649	716 bp downstream
Tssr157650	transcription start site region 157650	775 bp downstream
Tssr157651	transcription start site region 157651	829 bp downstream
Tssr157652	transcription start site region 157652	966 bp downstream
Tssr157653	transcription start site region 157653	1083 bp downstream
Tssr157654	transcription start site region 157654	1126 bp downstream
Tssr157655	transcription start site region 157655	1163 bp downstream
Tssr157656	transcription start site region 157656	1193 bp downstream
Tssr157657	transcription start site region 157657	1315 bp downstream
Tssr157658	transcription start site region 157658	1367 bp downstream
Tssr157659	transcription start site region 157659	1470 bp downstream
Tssr157660	transcription start site region 157660	1623 bp downstream
Tssr157661	transcription start site region 157661	1644 bp downstream
Tssr157662	transcription start site region 157662	1749 bp downstream
Tssr157663	transcription start site region 157663	1808 bp downstream
Tssr157664	transcription start site region 157664	1930 bp downstream
Tssr157665	transcription start site region 157665	1937 bp downstream
Tssr157666	transcription start site region 157666	1962 bp downstream