rs37337938 SNP Detail

Summary

• ID
  rs37337938
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149152011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTGAGT GAGTTAGTAT
  GAAGCCTGCC TTGTCTCTGG CAAGAAGCAG CTGCAGAATG CCCAACCAGT CACACGATTA
  GGCTTCTCTA TGGAAAATCG GTAAAACCAG CTGTTGAACC AAACTGGTCA CAGTTATGAG
  GAAGCTGGTG TTGACATGAT ATGAGCCAAG TGACACAGGT TAGGTATCTT TCAGTGCTAA
  K
  CTCTCAGCAT AAACACACAA GCATTTACAG AGGGCAAGAG AGATCTCCCA GCATCTGCCC
  TGTTGCTGCT GTTGCTGATG CTGTTGCTGA TACTGTTGCT GCTGCTGCTG CTCTGTCTCT
  CCTGTCAGGA AAGATACTCT GTGACTGACG AGATGGACAC ATGTGATACT TTAAAAGAAA
  CTGTCAAGGA AATGATAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51052110	NES13892928	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T	G	T	T	T		T	T	G		T
ss136071461	ENSMUSSNP974778	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
ss321019009	CHEV_3_149109338	CHEVERUD	SCREENING_POP	f	SNP												T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37337938					SNP	G	G	T	T	T	G	T	G	T	T	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052110	NES13892928	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149152011 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	873 bp upstream
Rr398127	regulatory region 398127	550 bp downstream
Rr587324	regulatory region 587324	1273 bp distal
Rr587325	regulatory region 587325	739 bp distal
Tssr36100	transcription start site region 36100	1130 bp upstream
Tssr36101	transcription start site region 36101	1109 bp upstream
Tssr36102	transcription start site region 36102	1096 bp upstream
Tssr36103	transcription start site region 36103	1005 bp upstream
Tssr36104	transcription start site region 36104	957 bp upstream
Tssr36105	transcription start site region 36105	879 bp upstream