rs37338000 SNP Detail

Summary

• ID
  rs37338000
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4430284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAACCTTT TAATTATAAG
  CAGGTTCTTT AATGCATTGT AGTTTCCTAT AATAAGTATA TAATGCTATT ATAAGCAAAA
  CTACAGTAAA CTCTCCTTAT ATTTCACTAA ACTGGAATCA CAATTTTCCA ACACTAAAGC
  TTTTCCCTAT ATCAATATCA GCATGCTACA AAGATTGCTG TTAGATTTTA GTAACAGACA
  M
  TAACTATTAA TAGCATGTAT TGTTCTAATG GTTAAAGATA AAACAGAGGT TTGTGTTCTA
  TATATGAAAG ATATTGCCAA AAATAAAATG AGCATACCAT ATTTTTAAGA GAAATATTTC
  AAATAGTTTT GTACTTACCA GAAGTTGAAC CTTTCCTTAC GAAGAAAAGA GTAAATAGTT
  TGTGTGGTCT GTATAAACGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51224828	NES14300853	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37338000					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51224828	NES14300853	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4430284 () rs orientation: forward

Symbol	Name	Function Class
Rp1	retinitis pigmentosa 1 (human)	within coordinates
Tssr10872	transcription start site region 10872	176 bp downstream
Tssr10873	transcription start site region 10873	195 bp downstream