rs37339430 SNP Detail

Summary

• ID
  rs37339430
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60195040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGCCTCA GAAGCCCCTC
  TACCTGTCAC TGATCACTCT GTGAAGCAGG CATCGCCAGC CAATCTGCAG AGGGGACACA
  CATTCACTTC CTAATGGCAC AGCAGGGACT AGACTGTAGG TTTTCTGGCA GAGCAGAGGG
  TGGCTGTCAG CCCTGGTGCT GGCCCAGAGA GAAACCTTAT GGGTGAGTTA CAGGGCTTGG
  S
  TCTCAAGGAA GCTGAGGACA TAGAGGTTCA TTTGAGAATG CCCTATGGCA TATATATATA
  GTAGACAAGG GGATATATTT CACAGTGCCC AACATTTCTA TGAAAAGAGG GCTGTGTCGC
  ATAGGTTTGT CAGGCATCCA ATGTGATCCA GTCCTTGCTT AGGCCCTGGA AAGGCAGAAG
  GAAAAATTGT GATCCCAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50866532	NES14171004	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37339430					SNP	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866532	NES14171004	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60195040 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr228092	regulatory region 228092	1562 bp proximal
Tssr93621	transcription start site region 93621	1224 bp downstream
Tssr93622	transcription start site region 93622	1140 bp downstream
Tssr93623	transcription start site region 93623	776 bp downstream
Tssr97721	transcription start site region 97721	1161 bp upstream
Tssr97722	transcription start site region 97722	1027 bp upstream
Tssr97723	transcription start site region 97723	995 bp upstream
Vsir	V-set immunoregulatory receptor	within coordinates