rs37339735 SNP Detail

Summary

• ID
  rs37339735
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41359399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG GAACTAAACC AGAGCACAAA
  K
  GGAAACCTTT AAGGAAGAAT AAAGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	SM/J
ss50825179	NES13542258	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	G	G
ss325809422	CHEV_19_41445450	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	SM/J
rs37339735					SNP	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50825179	NES13542258	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41359399 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr547619	regulatory region 547619	462 bp distal
Rr547620	regulatory region 547620	489 bp proximal
Rr547621	regulatory region 547621	1280 bp proximal
Tssr159304	transcription start site region 159304	728 bp upstream
Tssr159305	transcription start site region 159305	701 bp upstream
Tssr159306	transcription start site region 159306	947 bp downstream