rs37339870 SNP Detail

Summary

• ID
  rs37339870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60195607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGTGGT GAGACCTTTG
  GATCAAGCCC CTCTGCCACA CACCCTGCTG AGCATGGTGG CTCAGTGCTG AGGTGTCTCC
  TCAGCACTGA GCCACCATGC CATCCTCACT TCCTCTCTCA GCATCCTCTT CTGTCCCTTC
  ACTCTGAGCA ACCACCCTGG TCCTGCTGCT TCTTCAAGAA CCTGTCTCGG CAAACTGCTA
  Y
  TTCTGTTACT GCCTGCATGC CCTGGGCAGG GAAATGAGGT TCAGGGAGAG CCTGGCTGGT
  CTGGAACTCA CTGCGGAGAC CAGGCTAGCC TCAGATTTGG AGCAGTCCTC CTGCCTCTGC
  CTCCCAACTT CTGGGACCCC AGGTGTGAAC TTTTGGAAAA GAAGCCACAC GCTTTCAGTC
  TTGAGAACAG AGACACAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50866530	NES14171006	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37339870					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866530	NES14171006	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60195607 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr228092	regulatory region 228092	995 bp proximal
Tssr93621	transcription start site region 93621	1791 bp downstream
Tssr93622	transcription start site region 93622	1707 bp downstream
Tssr93623	transcription start site region 93623	1343 bp downstream
Tssr97721	transcription start site region 97721	1728 bp upstream
Tssr97722	transcription start site region 97722	1594 bp upstream
Tssr97723	transcription start site region 97723	1562 bp upstream
Vsir	V-set immunoregulatory receptor	within coordinates