rs37341983 SNP Detail

Summary

• ID
  rs37341983
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11350024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGCTAC TTATTTTCCA
  AGTAATAGTT GATCTCCATT AATCACTCAA ATGACGTGAC TTGGTTTTCT CTCTTCCTCT
  TTTATGTCTC ATATCTTCAG GCAGCTGCTG AGATTTACAG CTTGCTTGTT TTGGGATGTT
  TCTTTTTAAA TGCTAGCAAA ATTGTTCACA AGCTTTCTTC TTAGACTGTT CTTAAAATCT
  S
  TCATTGGTTT CCCTTATAAC ATCAAGTTCA AACAGCCAGC ACTCTTTGCC TTGCAATATT
  TGGATATGGG CTACAGCAGT CCTCTGCTCC CCAGGTAATA AGTAGACCTA TCATTGAATC
  CCCTGTTTGC TTGAACAGAG CCCTAATTAT GTCATGCCTG TCTTAAAAAT TGAATTTCTG
  TGTACTTACA GGTCTTGGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50596000	NES13637770	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C	G		C	C	C	C		C
ss325721053	CHEV_19_11447150	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37341983					SNP	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50596000	NES13637770	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11350024 () rs orientation: forward

Symbol	Name	Function Class
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544325	regulatory region 544325	1207 bp distal
Tssr155162	transcription start site region 155162	120 bp downstream
Tssr155163	transcription start site region 155163	104 bp downstream
Tssr155164	transcription start site region 155164	73 bp downstream
Tssr155165	transcription start site region 155165	within coordinates
Tssr155166	transcription start site region 155166	35 bp upstream
Tssr158339	transcription start site region 158339	399 bp upstream
Tssr158340	transcription start site region 158340	287 bp upstream
Tssr158341	transcription start site region 158341	270 bp upstream
Tssr158342	transcription start site region 158342	265 bp downstream