rs37348980 SNP Detail

Summary

• ID
  rs37348980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123154628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCCCCCG TGAATTAGCT AAGCCTTTGG CCTTGAGGAA
  GGGAGTGGTT GGCACCCTTG GTTTTCTTGG GAAGGGAGTG TTGTCTGGGT CTCTCCCTGT
  M
  GCCTGCAAAC AAGTGGATCA ACACAGTTGT GAGCCCGGAT GCTTTAGAAG CCCACAGTGC
  ACTAGGCCAG AGAGGAAAGG CCAGGAGGTG TGATATAAAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss51195024	NES13812887	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs37348980					SNP	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195024	NES13812887	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123154628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	665 bp distal
Gm2479	predicted gene 2479	1611 bp upstream
Orai1	ORAI calcium release-activated calcium modulator 1	within coordinates
Rr399336	regulatory region 399336	1481 bp downstream
Rr620047	regulatory region 620047	1481 bp distal
Rr620048	regulatory region 620048	1148 bp distal
Rr620049	regulatory region 620049	1034 bp proximal
Tssr48743	transcription start site region 48743	1447 bp downstream
Tssr48744	transcription start site region 48744	1412 bp downstream
Tssr48745	transcription start site region 48745	1266 bp downstream
Tssr48746	transcription start site region 48746	1230 bp downstream
Tssr48747	transcription start site region 48747	325 bp downstream
Tssr53183	transcription start site region 53183	1702 bp upstream
Tssr53184	transcription start site region 53184	655 bp upstream
Tssr53185	transcription start site region 53185	608 bp upstream
Tssr53186	transcription start site region 53186	585 bp upstream
Tssr53187	transcription start site region 53187	992 bp downstream