rs37351512 SNP Detail

Summary

• ID
  rs37351512
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83689536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTAGAC ACTTGGAGAA
  AGAAGTCTCG GGTCCTGCGG TCAACTGGAT CCTAGGCCTG AGGCCTGTTG TTTTTCCGCC
  ATCCTGGGGT TTCGGACTCA CTCACTTGGC TTCCCCCAGC TGCCTCCCAC AGGCCTCAGG
  AGGCCTGTAG CCAACTTTCT TTTACGGAGG GAAACCTAGG TTTCTGTCAC CCAAGTCAAT
  W
  TCTTAGAGCA GGTGGAGTAC AACTTTCCTG ACCCCCACCA CCACTGTCAC CATGTGAGTG
  GCCCTGGGGA TCTGAGAGCC AGCTAGGGCA GGGCATGGAG GTACAGGAAG CTCTCTTAAA
  TTAAGACGCT GCCAGGGACC CTGAATAAAG AAACACTCCT GGGAATAGGT GTGGTCATTG
  GAAGGCTGGG TGGCTACTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss51352651	NES13742461	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs37351512					SNP	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352651	NES13742461	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83689536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17611	CpG island 17611	124 bp distal
D6Mit8	DNA segment, Chr 6, Massachusetts Institute of Technology 8	1315 bp proximal
D6Mit8.1	DNA segment, Chr 6, Massachusetts Institute of Technology 8.1	1472 bp proximal
D6Mit8.2	DNA segment, Chr 6, Massachusetts Institute of Technology 8.2	1270 bp proximal
Gm32943	predicted gene, 32943	244 bp downstream
Gm55235	predicted gene, 55235	1622 bp downstream
Gm66907	predicted gene, 66907	1995 bp upstream
Rr632917	regulatory region 632917	1633 bp distal
Rr632919	regulatory region 632919	1280 bp distal
Rr632920	regulatory region 632920	within coordinates
Rr632921	regulatory region 632921	1505 bp proximal
Tssr57361	transcription start site region 57361	1266 bp downstream
Tssr57362	transcription start site region 57362	1982 bp upstream
Tssr61702	transcription start site region 61702	1689 bp upstream
Vax2	ventral anterior homeobox 2	within coordinates
Vax2os	ventral anterior homeobox 2, opposite strand	353 bp upstream