rs37355687 SNP Detail

Summary

• ID
  rs37355687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135146320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCTGTG TTGTGTGGTC
  GCTGCTCTCA CCCGAAGCTA TTTATCTGAG GCACTGGGAA CCCTGTAAAA GCCTTCTGAA
  AGATCCTGGG GGGAGTGGGG GTTGACAGTG CAGGGAAACT GGATGGGGAG ACTGTTTTTG
  CTTAAAACCC ATCTTTAAGG AGGCTTGTTT GAGCAAATCG ATATAGTTTG ATAAGTTGTC
  R
  ATTTAAGTTG GCAAGAACTA GAATTTTTTT CAGAAATATT TTGCGAGTGG ATCCACCTCT
  CCGGTGGTTT AGTCTCATTT TCTTGCTCTA ACTTCTATCC CGCATTTTAA GATGGCGGCT
  GCTTTAACTG GCTCGGGTTC TTTCCGGCAT CTCCTTTTCT AACTATTTAA GATAATGTTC
  TCTGTTAGCG TTAAACGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51652679	NES14652411	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37355687					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51652679	NES14652411	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135146320 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			1894 bp upstream
Cpgi13855	CpG island 13855			907 bp distal
Rr398041	regulatory region 398041			83 bp downstream
Rr585710	regulatory region 585710			1984 bp distal
Rr585711	regulatory region 585711			1338 bp distal
Rr585712	regulatory region 585712			1193 bp distal
Rr585713	regulatory region 585713			692 bp distal
Rr585714	regulatory region 585714			309 bp proximal
Tssr1058	transcription start site region 1058			283 bp upstream
Tssr31816	transcription start site region 31816			1975 bp downstream
Tssr31817	transcription start site region 31817			1779 bp downstream
Tssr31818	transcription start site region 31818			1506 bp downstream
Tssr31819	transcription start site region 31819			1496 bp downstream
Tssr31820	transcription start site region 31820			1461 bp downstream
Tssr31821	transcription start site region 31821			1385 bp downstream
Tssr31822	transcription start site region 31822			1119 bp downstream
Tssr31823	transcription start site region 31823			1090 bp downstream
Tssr31824	transcription start site region 31824			1059 bp downstream
Tssr35783	transcription start site region 35783			1921 bp upstream
Tssr35784	transcription start site region 35784			1854 bp upstream
Tssr35785	transcription start site region 35785			183 bp upstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				Noncoding-Transcript-Variant