rs37358245 SNP Detail

Summary

• ID
  rs37358245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84466859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGCAGG CCCCTGCAGC
  TGTTTGCCAC CAACTGTGAC ACCCTGGGAC TCTATTTCCT GGTTCTAGGT CCATGGCTAC
  TGAGCTGCCT GCCACCTGTC ACTAGCACTC AGGCCAGTCA TTGTGGTTAG GGTGACCCCA
  GTTTGTGCCC CAAGTTCCAT ATCTTGGGGT AACTCCAGCT GGTGCCCCGT TCCATTTTTT
  Y
  ACTGTTTGTT GTCAAGTTAC TTAGGTGACT TAGCCATCAA ACAACGGTTG AGGCACCCAG
  GGTGGGGCGG GAAAGTCATG ATGAAAGCCA AGTTCAAACC ACAGCCTGGT AAGTTCCTTT
  CAGCCAGCAG CTCCGTCCCA GACAAGTCCC AAGGAGATTC TCTGCCTGTT CCTGGCACGG
  AGACAGCAGG GGACAGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51971730	NES14984971	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37358245					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971730	NES14984971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84466859 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	within coordinates
Cpgi20655	CpG island 20655	648 bp proximal
Gm46046	predicted gene, 46046	1056 bp upstream
Rr368559	regulatory region 368559	92 bp downstream
Rr666301	regulatory region 666301	929 bp proximal
Rr666302	regulatory region 666302	1086 bp proximal
Rr666303	regulatory region 666303	1140 bp proximal
Rr666304	regulatory region 666304	1986 bp proximal
Tssr2618	transcription start site region 2618	117 bp upstream
Tssr2619	transcription start site region 2619	160 bp upstream
Tssr2620	transcription start site region 2620	1046 bp upstream
Tssr78289	transcription start site region 78289	1809 bp downstream
Tssr78290	transcription start site region 78290	1781 bp downstream
Tssr78291	transcription start site region 78291	107 bp upstream
Tssr78292	transcription start site region 78292	133 bp upstream
Tssr78293	transcription start site region 78293	251 bp upstream
Tssr78294	transcription start site region 78294	334 bp upstream
Tssr78295	transcription start site region 78295	385 bp upstream
Tssr78296	transcription start site region 78296	405 bp upstream
Tssr78297	transcription start site region 78297	1158 bp upstream
Tssr82049	transcription start site region 82049	160 bp upstream
Tssr82050	transcription start site region 82050	72 bp upstream
Tssr82051	transcription start site region 82051	197 bp downstream
Tssr82052	transcription start site region 82052	943 bp downstream