rs37358824 SNP Detail

Summary

• ID
  rs37358824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131456858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGTGTT CTAGCCACTC
  CCACCAGTCT GATGATTCCC TTGGAGTTTA TCTAAGTGGG CAGACTGTCT GGACAAAGCC
  TGTGGTTTGC CCAGCGTGGT CAGTACTGAG GTCACTCTTC CAGGCCCTTA GAGTCATGTG
  TCTGTGCATC CCTTATGTTG ACTCTTAAGG CTCAATGCCA TGTCCAAACA CCCTTCCTCA
  M
  TGAAGCAAGT CTTTAACAGC CACTTGGAAA GAAGTGTGTA ATGATTCATT TAAAGTGAAA
  TTCATGGTTA ATAAAGATAG CAAACTTGAG CATTTTAAAA CATAAGGAAG TAAAACTATA
  CATAGAGCCT CTGCACCCCT TTGAAATATT TTGTGAATTT GCTTAGGTAG TCATCATTTA
  TTACCAAGGT AAATGAGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368026	NES14475982	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37358824					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368026	NES14475982	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131456858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	479 bp distal
Fam72a	family with sequence similarity 72, member A	within coordinates
Gm70877	predicted gene, 70877	1432 bp downstream
Rr396286	regulatory region 396286	1537 bp downstream
Rr396287	regulatory region 396287	1227 bp downstream
Rr418131	regulatory region 418131	1784 bp distal
Rr418132	regulatory region 418132	1207 bp distal
Rr418133	regulatory region 418133	965 bp distal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	1768 bp upstream
Tssr8629	transcription start site region 8629	1249 bp downstream
Tssr8630	transcription start site region 8630	1209 bp downstream
Tssr8631	transcription start site region 8631	1118 bp downstream
Tssr8632	transcription start site region 8632	744 bp downstream
Tssr13601	transcription start site region 13601	1827 bp upstream
Tssr13602	transcription start site region 13602	1735 bp upstream
Tssr13603	transcription start site region 13603	1580 bp upstream