rs37366221 SNP Detail

Summary

• ID
  rs37366221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:73002389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACGCAGA CCGATTGCCT
  TCTGGCAATT GCGATGACGC CATTCCTTTA AGCCTAAACG GGCATTTGTT TTAGGTGCTG
  GCAAAAGATA TCCTTTTGAA AAATGAAATA TGAGGGTACG GTTTTGAGAG GTACACACAG
  TGGAATAGAA TTCATTTTTT TTCATGTAAT TTGGCACACT GAATTAAACT GAAACACTGT
  Y
  GCCTCCTCTC TGGGCACTAC TGAAGTCACA CTGTTGTCAT GTATATTTAT CCTCAATTTC
  TCCAAATCCT GAATGGCCAA AAAAATTACG AAGGGCAAAA GTCACTGTCT TTCTTCCCAC
  ATTGTTACCC CAGTGATTTC TGTCTTCCAG AATCCCCTAT TTTGAAACCA GTGCTGCCAA
  CGGGACAAAC ATAAGCCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50746388	NES14237709	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37366221					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50746388	NES14237709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:73002389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22027	CpG island 22027	175 bp proximal
Rab27a	RAB27A, member RAS oncogene family	within coordinates
Rr206717	regulatory region 206717	188 bp distal
Tssr86085	transcription start site region 86085	1137 bp downstream
Tssr86086	transcription start site region 86086	273 bp downstream
Tssr86087	transcription start site region 86087	253 bp downstream
Tssr86088	transcription start site region 86088	1504 bp upstream