rs37374657 SNP Detail

Summary

• ID
  rs37374657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:33785435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCCTGT AACTCCAGTC
  CTATGGGACC ACCACTCTCT TCCCTCCTCC AAGGACACCA AGCATGCACG TGATGAAGAC
  ACACAATCAG GCAAAACAGT CACCCACACC CATGAAACAA GTGTTTTAAT TTAAAAAGGA
  AAAAAAAAAA AAGGATTGTT CAGCATCTTC TGTCTCAAGA GTAGCAACTA AAATTCTCTC
  Y
  TTTACGGTTG CCAAATCCAA CCTAGGGGAA GATCTGAAAG GCCATGTGAC TTGGTATGGC
  TCCAGTCCAA GCCACAAGCT CACACACCAG AGGAAAAAGT TCCAGAACCA AGATCTAAGC
  TCCAGGGACA GCAAGCAGAA TCATTTATCA GGCCATGAGA AGGGACCGGG CTTGCTATGC
  TCACTAAACA AAGAGACGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51694556	NES14742068	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37374657					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51694556	NES14742068	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33785435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15737	CpG island 15737			739 bp proximal
Fam53a	family with sequence similarity 53, member A			Intron
				Noncoding-Transcript-Variant
Gm9903	predicted gene 9903			1834 bp upstream
Rr399034	regulatory region 399034			1547 bp upstream
Rr609574	regulatory region 609574			within coordinates
Rr609575	regulatory region 609575			616 bp proximal
Rr609576	regulatory region 609576			811 bp proximal
Rr609577	regulatory region 609577			1521 bp proximal
Rr609578	regulatory region 609578			1845 bp proximal
Tssr45824	transcription start site region 45824			1824 bp upstream
Tssr45825	transcription start site region 45825			1858 bp upstream
Tssr50608	transcription start site region 50608			1444 bp downstream
Tssr50609	transcription start site region 50609			1486 bp downstream