rs37377330 SNP Detail

Summary

• ID
  rs37377330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129204306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCCATT GCATACTTCA
  TGCCAGAAGA GGAACATACA CTTATTTCAA CAACCAAGGA GCCTGCAACA CTAGGTACTT
  GCATTAGGCA GGTCCTCTGG AGAAACAGAA CTGATAGAAT ATATATTGTA AAGGGGATCA
  TGATCTAACT TCAACTCTCA GCTTGGCATG GCCTAGAATC ACCTGTGAAG GAAGTCTGAA
  Y
  AAGGGATTTA TTACATTGGC TGACTCAGTA TCCGTTGGGT CATCCAACAT GAATGAGAGT
  ATGAATGTTG GAGAGGTAGA AAGCTAGGCA ATGCCCAATC TAGGAAACTC AGCTGCCTTC
  AGTATAGTGC TGAAGGCCTG GTACCACCTA GAGAGTCAGT GGCACAGTAT CAGGTTGTCA
  GATGGAAGAA TCTGGAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss51418755	NES13704084	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs37377330					SNP	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51418755	NES13704084	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129204306 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	within coordinates
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	1984 bp upstream
Tssr63548	transcription start site region 63548	1896 bp upstream
Tssr63549	transcription start site region 63549	1744 bp downstream
Tssr63550	transcription start site region 63550	1894 bp downstream