rs37378439 SNP Detail

Summary

• ID
  rs37378439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19584076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACCTCA TTATTTCCTC
  AAATCTCCCT TTATCCTGGA TTTGAGTGAA GAGATGGCTT GATTTTCCTG CTCTGGTCCC
  TTGGCTCGAA CCATGGCACT AAATCTTGGA AACAAGTATT TTACTGCTAA CAAGACCTGG
  TTAAAGAGTA AAATGCCAAG CAAATGGCTG GGTACATGCG TGTCCCCTGT CATCTATCCT
  R
  TAGTTTCTTG GATGTTCATG TGTTCACATG GGAAGTCCTA GTGAGCTGGT TTCGTTCATC
  TCAGAAAACA AGGGTTCACT GATATTATAT CTTCAAGGTG CCATGAGAGC TCCGAACTCA
  CCATGAATGT GTCTGCCACA GCCCCTGTGC TTCATCCTTT ATCATATTCC TAGTTCTCAC
  AGAGAACAAG CTGTGCATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50921127	NES13476836	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37378439					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50921127	NES13476836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19584076 () rs orientation: forward

Symbol	Name	Function Class
Gm55451	predicted gene, 55451	3 bp downstream