rs37378639 SNP Detail

Summary

• ID
  rs37378639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52520249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGGTAC CCAATAACCA
  TTTGTCAAAG GAATTCAGGG GACAGACAAG CGGCAGCAAG CTGGGGATGC TTCTCTGGGA
  AAGAGAGCCT TTTATTTCTA GAGAGTTTCT GTGATGGACA GGAGCTCCCA ACAACAAAAG
  AAATAAGGAG CCTGGGATTG GAGGTTCCTG GCTCCTCCAA TCTGTGTAGT CTATGTAACA
  R
  TCTTCCTGGG CAGGCCTCAG TTGGCAGAGT GCTTTCCTAA CACGCATGAA GGCCTGTGTT
  TGACCCCAGC GACACACCAA CGTGATAGTG CACGCCTGCA ATCCCAGCAT TTGGGAGCTG
  ATGACAGGGG GATTAAAAGT TCAAGGTAAT CCCCAGTTAC AGATGGAATT GAAGCTAGCT
  TGGGTTAAAT GCAACTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118310	NES13854584	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37378639					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118310	NES13854584	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52520249 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	1704 bp distal
Rr611420	regulatory region 611420	479 bp proximal
Rr611421	regulatory region 611421	895 bp proximal
Sod3	superoxide dismutase 3, extracellular	897 bp upstream
Tssr46168	transcription start site region 46168	1005 bp upstream
Tssr46169	transcription start site region 46169	1018 bp upstream
Tssr46170	transcription start site region 46170	1049 bp upstream