rs37379432 SNP Detail

Summary

• ID
  rs37379432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42173078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATCTGTGG ACCTTTTTAT TGTCAAGCCT ACTTGATCAA
  ACATGGCTAG CTTTCATTTT CCTCTCCTAG GCCATATTTT GGTAGGCACT TCCAGTTAAA
  Y
  GGCAACCATT TGTCTTGCCC ATCCGTAAGT CAAGTACGGT GTTAGATCCC AGGCTCTCAG
  TAGGATGCCT CAGAGACGCA GCATACGCCA GCATCCCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52006420	NES15025788	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	T	C	T	C	T	C	C
ss136379277	ENSMUSSNP3086497	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37379432					SNP	C	C	C	C	C	T	C	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52006420	NES15025788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42173078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	1872 bp proximal
Rr677189	regulatory region 677189	1813 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr89017	transcription start site region 89017	354 bp downstream