rs37380800 SNP Detail

Summary

• ID
  rs37380800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:23115310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAATGAAG AAAATTGTCG
  CTGAGGTAGA GGTGACATGG GAGAGGGAAT AGAGTTAAGT CTTCACGAGA GCCTGGTCTG
  CTTTGTAGAA TAGCTTTGTG CATATAATCT CATTTAATCA GTGGAAAAAC ATCCCGAGAC
  TTGTGTTACT ACCACATGCT TGCACAGAAG TAAAAATCAA GTTACAGTGG ACTAAGGATA
  R
  AGAGTGCCCG AGGTGTGCAG CAGGTATGGG ACCACGAGGC CAATATGTTG AGTCTATAGA
  GTAAGGAGGC AGTTAATAAC ACAATGCACT GTTTTATTAG AACCGTTTGA AATCAAGGCA
  GCGCCATATT TCCTGTGCGG TTTTCGGCCA GGCAGTATCC TATTTAATCT TTGTAAAATT
  TCCATAGGAA ACTTCTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51994667	NES15009134	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37380800					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51994667	NES15009134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:23115310 () rs orientation: forward

Symbol	Name	Function Class
Gm68239	predicted gene, 68239	350 bp upstream
Rr675323	regulatory region 675323	255 bp proximal
Rr675324	regulatory region 675324	361 bp proximal