rs37386447 SNP Detail

Summary

• ID
  rs37386447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70405970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAGCTC AAGGTCCTTT
  GCTTGTAGGC CAGGTCATCC ACCTCAGCGC TGTAGAACAC ATGGAGTGAG TCATCTCTGC
  ACTACAAAAT AGCCTCCGGC TGCTGCTCTG CAGTGAGGGC AGAGTTCACG TCCCAGGTCA
  CAGGGTCTCC TGGACAACGT AGGTAGGGCT GCACGGCTGG TAGACAAGGC CATCTTCAGC
  Y
  ATCCTCGCTT TGTCTGTGCC GTCCTGCAGC ACTCCATTCC TCATCTTCTC TGGAAACAGG
  TTGGGGATCA CAGGGATATC CTGGCTGTGG CTTCTCGAGC AAAGCCGCTT CTGGCAGGAT
  AGGGGCAGGA GTGCTAGGAG CTTTGGCAGC ACAGGGTAAA TGGTGCCGGG GTTCAGGGAC
  CGGCCCCGCA TTCCCCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51678240	NES14821830	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37386447					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51678240	NES14821830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70405970 () rs orientation: forward

Symbol	Name	Function Class
Gm6157	predicted gene 6157	within coordinates
Igk	immunoglobulin kappa chain complex	within coordinates
Tssr61316	transcription start site region 61316	982 bp downstream