rs37387146 SNP Detail

Summary

• ID
  rs37387146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58010040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCCAAA CGCCCTGCAT
  GCAACTAACT CCATGCCACG CCTGCTCCCA CTATGGTGCA CCTGCTTTCT CTACTCAGAA
  TAGATCGCTC CAAAATATTT TCATAATATG CTTTCTCACT CAACGGTCAC CTCAGTGATG
  CCACCCTAAG GAGGATTTAC CATTCCAATC TCACACAACC TCACCCCTGT CCCTTAGCAT
  Y
  TGCTTCTGAC AGACAGGCTG TGTACCTCTT TAGCTTATCC ATTCCCAGGA ACCCCCATGA
  GATGGATTTA GCTATATCCT AAGGAAGGGG TGGGGGTGGG GGTGCGGGGG TGTGGGTGGG
  TGAGGAGGAG TTGGGGGGGC TCATAGCAGG TGTTTTGACA TTTGTTAGGT AAATTAGTGG
  TGAATTCTAA CAGCTACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50405912	NES13432240	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37387146					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50405912	NES13432240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58010040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10080	CpG island 10080	759 bp proximal
Rr393751	regulatory region 393751	480 bp upstream
Slc12a2	solute carrier family 12, member 2	1710 bp upstream
Tssr5332	transcription start site region 5332	1323 bp upstream
Tssr151207	transcription start site region 151207	1628 bp upstream
Tssr151208	transcription start site region 151208	1652 bp upstream