rs37387420 SNP Detail

Summary

• ID
  rs37387420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114269833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAACGATG CCGGTGTGTC
  TGGGTTACAT GAAGGGCAGG AAGGTGGCGT CGTGGCTTCG TTTTACGTGG AGGAGGGCGC
  ATAGAAGTCA CAGGACAACT TGGGGAAATA TCTCACTATC ACGTGGGTCC GGAGGTTAAA
  TCAGGTTGGC GGGCTGGGCG CCAGCTGCCT TCGTGGCTTT TTGTAAGCCA CCTGGTTTAC
  Y
  CCAAAGCCAA CAAACCCTGG GGTAGTGAAC AAGAGTGAAT GAAATGACCT TTGGTCTTTT
  ATTAGAAGTC AGGAAAGACG ATCGAGGCCT TAGGCTGTAA TCTCAACCCT TGAGAGCTGG
  GGGGCTGGAG GTGAAGGCCA ACCTCAGATT CTGTGCTATG GGAGGCCCTG TCTTTTAAAA
  AGAAGAGGGG GCGGAGTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51798696	NES14715466	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37387420					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798696	NES14715466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114269833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	within coordinates
Gm73235	predicted gene, 73235	913 bp downstream
Gm73237	predicted gene, 73237	1058 bp upstream
Rr617829	regulatory region 617829	1376 bp distal
Rr617830	regulatory region 617830	836 bp distal
Rr617831	regulatory region 617831	within coordinates
Tssr48056	transcription start site region 48056	1396 bp downstream
Tssr48057	transcription start site region 48057	1328 bp downstream
Tssr48058	transcription start site region 48058	594 bp downstream
Tssr48059	transcription start site region 48059	552 bp downstream
Tssr48060	transcription start site region 48060	438 bp upstream
Tssr52695	transcription start site region 52695	1046 bp upstream
Tssr52696	transcription start site region 52696	175 bp upstream
Ung	uracil DNA glycosylase	within coordinates