rs37390117 SNP Detail

Summary

• ID
  rs37390117
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12740745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCTATGTT AATTGCTGCT CTTTGCCCAG TGTGGGCAAC
  AAATATTTCC TTTAACATGG TGGGATGCTG CCGACTCCTG AGGATGAGTA ACAAGGGCAT
  K
  CTTTTCAATG CTAGGATAGA ATGCAAGACA TCTTCCTTTC CACAACTAGG ATGTAAGGCT
  GTACAGAATA TACAAAGCCC ATGGCACACT CACTGCCTCT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50620950	NES13637990	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37390117					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50620950	NES13637990	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12740745 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	279 bp downstream
Gm44505	predicted readthrough transcript (NMD candidate), 44505	279 bp downstream
Rr356731	regulatory region 356731	745 bp distal
Rr361368	regulatory region 361368	804 bp distal