rs37391022 SNP Detail

Summary

• ID
  rs37391022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69274833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTGCAG AGGCGGGGAC
  CTCCGTTGAT CAGAAGCCAG CACGCCCCCA ACTTCCCCGC TCAGTTCGGC GTCAGCGCGC
  AGCTCCGCCC AGCCTGGAAG TAACATTCGC ACCCGGCGCC AGGATCGCGG AAACCCAGGT
  AGGCTCTGCA GCCTCAAATG CACCGGAGAG ACATCGCCTC TTATGACAGA ATGTTCTAGA
  Y
  AGGGCATTGC GGCGGGTCAG GTTACCTCGA GACTCACCTC CTGAGCAGCA AGCCCCGCAG
  CTTGAAAGCT GAGACCGTGC GGCTCCGCAG CCGCTCCGGC GCCATGTTCG CGATTTGGCG
  CCACCGCCGA CGCCCCGCCC CCTCCTGGAA TAGACACACC CCTTGTCCCG CCCTTATATT
  CTTGGGCTGG TGAAATGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51013767	NES14402726	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T		C
ss324083389	CHEV_12_70329046	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37391022					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51013767	NES14402726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69274833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	within coordinates
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	within coordinates
Rr403319	regulatory region 403319	within coordinates
Rr467012	regulatory region 467012	123 bp distal
Rr467013	regulatory region 467013	110 bp proximal
Rr467014	regulatory region 467014	132 bp proximal
Rr467015	regulatory region 467015	1262 bp proximal
Rr467016	regulatory region 467016	1354 bp proximal
Tssr113624	transcription start site region 113624	573 bp upstream
Tssr116494	transcription start site region 116494	108 bp downstream