rs37391635 SNP Detail

Summary

• ID
  rs37391635
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:87863773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAAAAGA CCAATTCAGA
  TATTTCCTGT TTGTCTGGAG TGCTTTAAAA CTGCAAACAC TGCCAGCCTA CAAGCAGCCT
  GCCACATAGT AAGTGTGTTT GTTTTGGAGG AGACAGTCTT TAGATTCTTT AAATTGGTGT
  TATAGGGCAG ATAATAAGAA TAAAATCTGT TGTTTATATT TTCTATTTGT AACTGAGCTT
  K
  TAACCCTGGT TATGTAATGA TAAGTCAGAC ATATTTTGTA CTACTGGATA ATCATTAGCT
  TGTCTTTGTT CTGTGAAACT TGTGTAAATA AAGACGCTCT TGGTTGCTAG TCAGTCAGAG
  CAACAGAAAT GGCCTGATCT CTAATAAGTA AGTCAGAGTT ACAGAAATGG CCTGATTGCT
  ATCAAGTCAG AGCTGCTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51736711	NES14799965	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37391635					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51736711	NES14799965	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87863773 () rs orientation: forward

Symbol	Name	Function Class
Copg1	coatomer protein complex, subunit gamma 1	1028 bp upstream
Cpgi17684	CpG island 17684	909 bp proximal
Rr399752	regulatory region 399752	814 bp upstream
Rr633771	regulatory region 633771	533 bp proximal
Rr633772	regulatory region 633772	926 bp proximal
Rr633773	regulatory region 633773	1103 bp proximal
Rr633774	regulatory region 633774	1148 bp proximal
Tssr57557	transcription start site region 57557	1097 bp upstream