rs37392993 SNP Detail

Summary

• ID
  rs37392993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29231111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTCTTT TCCTTTGTAA
  TTTGAAGGTG TCTTGAGTAA GGTGTCTTGA GTGTGAAAAG TAAACATATT TTTTTTTCTC
  TACTTTACCC AGATAGGCTA TTCTTGAAAG ATGGGATCCC TTTCTGGCAA AATAGAGAAG
  ACCATTGGCT TTGGAGTTAG ATCTGAGCGT GCAGTCTTAA GTTAGGATAA TGGTGTTCTT
  Y
  CCATTTAACA GCAGTGTTAA CTTAAAATTT ACTTTCTCAG AACCTTGTGT GGGGGTCGAT
  TGGATGCATG CAGAGCAGTA AATGGTTTGG TCGCTTCTGA ACGTCTTAGC TTCTCAGAGC
  TGGGCAGGCA AAGGAGGTTC CTAGCTGGCC CGTGCGTAGC TGGTCAGTCC CTGGTGCGGC
  TTCCATAGAG CATAGAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50753211	NES13566097	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C		C	C	C	C		C
ss325789626	CHEV_19_29328201	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37392993					SNP	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50753211	NES13566097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29231111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	1256 bp distal
Gm41829	predicted gene, 41829	1386 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	135 bp upstream
Rr546088	regulatory region 546088	1873 bp distal
Rr546090	regulatory region 546090	1260 bp distal
Rr546091	regulatory region 546091	within coordinates
Rr546092	regulatory region 546092	259 bp proximal
Rr546093	regulatory region 546093	1029 bp proximal
Tssr155781	transcription start site region 155781	1857 bp downstream
Tssr155782	transcription start site region 155782	1844 bp downstream
Tssr155783	transcription start site region 155783	1810 bp downstream
Tssr155784	transcription start site region 155784	1398 bp downstream
Tssr155785	transcription start site region 155785	1269 bp downstream
Tssr155786	transcription start site region 155786	1226 bp downstream
Tssr155787	transcription start site region 155787	1121 bp downstream
Tssr158749	transcription start site region 158749	1606 bp upstream